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Pharmaceutical Traceability Software: What It Should Deliver

Written by Covectra | Jul 21, 2026 7:22:57 PM

Pharmaceutical traceability software is often evaluated on compliance checkboxes: does it generate serial numbers, does it produce EPCIS events, does it satisfy DSCSA recordkeeping. Real operations ask more of it. Consider what a manufacturer needs when:

  • Onboarding a fifth contract packager with its own systems and timeline
  • A distributor requests EPCIS data in a format the internal team didn't anticipate
  • A returned shipment needs saleable-returns verification against a deadline
  • A packaging line runs at full speed and can't afford a data capture bottleneck

These are the moments that reveal whether traceability software was built for the full scope of pharmaceutical supply chain operations, or just for the audit.

Key Takeaways

  • Data capture needs to keep pace with the packaging line. Serialization and event data should generate and validate without slowing production.
  • EPCIS exchange succeeds or stalls on partner readiness. Onboarding trading partners is consistently the harder part, more than the software itself.
  • Aggregation accuracy shapes recall precision. Case-to-pallet data integrity matters most exactly when a recall is underway.
  • Saleable returns verification benefits from automation. Manual processes introduce delays that automated verification is designed to remove.
  • Integration determines how smoothly software fits existing operations. Connecting cleanly with a manufacturer's ERP and plant systems shapes whether traceability software adds value or adds friction.

What "Traceability" Requires From Software in Practice

DSCSA compliance sets the floor: serialize at the saleable unit, generate EPCIS events, retain transaction records for six years.

Operations ask for more. Pharmaceutical traceability software has to perform across several distinct layers at once:

  • Capturing accurate event data as products move through packaging
  • Exchanging that data with trading partners who may run entirely different systems
  • Preserving data integrity as units are aggregated into cases and pallets
  • Supporting fast, auditable verification when products come back through returns
  • Fitting into the ERP and plant systems a manufacturer already relies on

Each layer has its own failure points, and each is where "compliant on paper" and "workable in operations" tend to diverge.

Capturing Serialization Data at the Packaging Line

Serial number generation and event capture happen at line speed, which means software has no room for latency or manual re-entry. A capable system:

  • Generates and prints serialized codes without slowing throughput
  • Validates each code at the point of application, catching print errors before product leaves the line
  • Logs commissioning events in real time rather than in scheduled batches

Manufacturers running multiple packaging lines, or working through contract packagers, need this captured consistently across every site. Inconsistent capture at the line is often where downstream EPCIS data problems originate.

Exchanging EPCIS Data With Trading Partners

EPCIS is the GS1 standard the FDA recognizes for DSCSA transaction data exchange.

What current software should support:

  • EPCIS 2.0, which expanded the standard to carry sensor data and use modern JSON/REST API bindings, not just XML
  • Guided onboarding workflows for new trading partners
  • Built-in exception handling for data mismatches
  • Clear connection status tracking across every partner

What slows this down:

The Healthcare Distribution Alliance's EPCIS benchmarking survey found that manufacturers and distributors consistently ranked these as their top obstacles:

  • Trading partner onboarding time
  • Employee resource availability
  • IT staff availability for testing

Technology limitations ranked lower. Software that speeds up onboarding and simplifies exception handling addresses the part of the process that slows partners down most.

Why the timing matters now:

Enforcement has caught up with the requirements. Manufacturers were required to comply by May 27, 2025, wholesale distributors by August 27, 2025, and large dispensers' enhanced requirements took effect November 27, 2025. Broader pharmacy compliance is due by November 2026. Software that simplified onboarding during the original rollout continues to support partners still catching up.

Supporting Aggregation From Case to Pallet

Aggregation, linking individual units to the cases and pallets they're packed into, is where data integrity is easiest to lose and hardest to recover. If a case-to-pallet association breaks, the traceability chain breaks with it.

Software built for real operations should:

  • Automatically validate parent-child aggregation relationships at each packing step
  • Flag aggregation mismatches immediately, not after the product has shipped
  • Preserve aggregation data through relabeling, repackaging, or rework

Aggregation accuracy is what makes a recall precise instead of overbroad. Strong aggregation data lets a manufacturer confirm exactly which units, cases, and pallets are affected, and pull only those.

Meeting DSCSA Recordkeeping and Saleable Returns Requirements

DSCSA requires six years of transaction data retention and, for returned product entering the resale stream, verification against the original transaction history before it can be resold. Software should support:

  • Automated saleable returns verification, checking returned product identifiers against transaction records
  • Fast turnaround on verification requests, since delays here directly hold up inventory
  • Complete, retrievable transaction history without manual file assembly

Automated verification keeps returns processing fast and gives manufacturers a clear, auditable record of every check performed.

Integrating With Existing ERP and Plant Systems

Most pharmaceutical manufacturers aren't implementing traceability software into a blank environment. They're layering it onto ERP systems, warehouse management systems, and line-level control systems that already run the business.

This is frequently where implementations succeed or stall, depending on how well the software fits into what's already there. Software designed for integration should:

  • Connect to existing ERP and WMS systems without custom middleware for every connection
  • Support contract manufacturers and CMOs running their own separate systems
  • Scale as a manufacturer adds packaging lines, facilities, or trading partners

What This Means When Evaluating a Vendor

Taken together, these requirements point to a straightforward evaluation question: does the software handle the full operational path, from the packaging line to the trading partner to the returns desk, or only the compliance reporting at the end of it?

How AuthentiTrack Covers That Path

Covectra's AuthentiTrack platform is EPCIS certified and supports a serial event history repository for complete supply chain traceability. It's available in two configurations, depending on operational need:

  • AuthentiTrack Cloud Level 5 — end-to-end serialization data management for brand owners and contract manufacturers
  • AuthentiTrack Gateway — handles messaging format differences across trading partners running different systems

Implementation Support

Combined with Covectra's pharmaceutical serialization services, manufacturers get both the software and the implementation support to connect it into existing operations.

Pharmaceutical Traceability Software: Common Questions

What's the difference between serialization software and traceability software?

Serialization software focuses on generating and printing unique identifiers at the packaging line. Traceability software includes that function but also covers EPCIS data exchange, aggregation management, and the recordkeeping needed to trace a product's full chain of custody.

Does traceability software need to support every trading partner's system directly?

Not directly in every case. A gateway-style configuration can handle messaging format differences between a manufacturer's system and a trading partner's, so each new partner doesn't require a custom integration.

How does traceability software handle saleable returns verification?

It checks a returned product's identifiers against the original transaction history to confirm the item is legitimate and eligible for resale, a requirement under DSCSA before returned product can re-enter the supply chain.

Can traceability software work with a contract manufacturer's existing systems?

Yes, though this is where many implementations run into friction. Software built to support multiple CMOs or CPOs, each potentially running different systems, needs standardized data handling that doesn't depend on every partner using identical infrastructure.

What happens if aggregation data is incomplete during a recall?

Incomplete aggregation data forces a broader recall than necessary, since the system can't confirm exactly which units, cases, or pallets are affected. Accurate aggregation narrows a recall to what's genuinely implicated.

See How AuthentiTrack Fits Your Operations

Evaluating traceability software against a checklist only goes so far. The real test is how it performs against your actual packaging lines, trading partner mix, and returns volume.

A Serialization Review looks at where your current systems handle these requirements well, where gaps exist, and what a fuller AuthentiTrack implementation, whether Cloud Level 5, Gateway, or both, would look like for your operation.

Request a serialization review to see how AuthentiTrack would fit your current packaging and trading partner environment.

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